Index

_

__init__() (gffutils.feature.Feature method) (gffutils.interface.FeatureDB method)

A

add_relation() (gffutils.interface.FeatureDB method) all_features() (gffutils.interface.FeatureDB method)

annotate_gff_db() (in module gffutils.helpers) asinterval() (in module gffutils.helpers)

B

bed12() (gffutils.interface.FeatureDB method)

C

children() (gffutils.interface.FeatureDB method) children_bp() (gffutils.interface.FeatureDB method)

count_features_of_type() (gffutils.interface.FeatureDB method) create_db() (in module gffutils.create) create_introns() (gffutils.interface.FeatureDB method)

D

delete() (gffutils.interface.FeatureDB method)

E

example_filename() (in module gffutils.helpers)

execute() (gffutils.interface.FeatureDB method)

F

Feature (class in gffutils.feature) feature_from_line() (in module gffutils.feature) FeatureDB (class in gffutils.interface)

features_of_type() (gffutils.interface.FeatureDB method) featuretypes() (gffutils.interface.FeatureDB method) from_seqfeature() (in module gffutils.biopython_integration)

G

gffutils module

I

infer_dialect() (in module gffutils.helpers) inspect() (in module gffutils.inspect)

interfeatures() (gffutils.interface.FeatureDB method) iter_by_parent_childs() (gffutils.interface.FeatureDB method)

M

merge() (gffutils.interface.FeatureDB method) merge_attributes() (in module gffutils.helpers)

module gffutils

P

parents() (gffutils.interface.FeatureDB method)

R

region() (gffutils.interface.FeatureDB method)

S

sanitize_gff_db() (in module gffutils.helpers) schema() (gffutils.interface.FeatureDB method)

sequence() (gffutils.feature.Feature method) set_pragmas() (gffutils.interface.FeatureDB method)

T

to_bedtool() (in module gffutils.pybedtools_integration)

to_seqfeature() (in module gffutils.biopython_integration) tsses() (in module gffutils.pybedtools_integration)

U

update() (gffutils.interface.FeatureDB method)