pybedtools.bedtool.BedTool.links¶
- BedTool.links(*args, **kwargs)[source]¶
Wraps
linksBed
.The resulting BedTool will have a new attribute
links_html
. This attribute is a temp filename containing the HTML links.For convenience, the file or stream this BedTool points to is implicitly passed as the
-i
argument tolinksBed
Original BEDTools help::
Tool: bedtools links (aka linksBed) Version: v2.31.1 Summary: Creates HTML links to an UCSC Genome Browser from a feature file. Usage: bedtools links [OPTIONS] -i <bed/gff/vcf> > out.html Options: -base The browser basename. Default: http://genome.ucsc.edu -org The organism. Default: human -db The build. Default: hg18 Example: By default, the links created will point to human (hg18) UCSC browser. If you have a local mirror, you can override this behavior by supplying the -base, -org, and -db options. For example, if the URL of your local mirror for mouse MM9 is called: http://mymirror.myuniversity.edu, then you would use the following: -base http://mymirror.myuniversity.edu -org mouse -db mm9