bigNarrowPeak example

You can read more about preparing the files necessary for a bigNarrowPeak track on UCSC’s bigNarrowPeak help page. The following code uses the example files provided by UCSC.

This code is automatically run and the built trackhub is uploaded to the trackhub-demo repository. You can view the live hub using this link

import trackhub

hub, genomes_file, genome, trackdb = trackhub.default_hub(
    hub_name="bigNarrowPeak",
    short_label="bigNarrowPeak",
    long_label="bigNarrowPeak",
    genome="hg38",
    email="eva.jason@nih.gov",
)

track = trackhub.Track(
    tracktype="bigNarrowPeak",
    name="bigNarrowPeak",
    bigDataUrl="http://genome.ucsc.edu/goldenPath/help/examples/bigNarrowPeak.bb",
    shortLabel="bigNarrowPeak",
    longLabel="bigNarrowPeak",
    visibility="full",
)
trackdb.add_tracks(track)

trackhub.upload.upload_hub(
    hub=hub, host="localhost", remote_dir="example_hubs/example_bigNarrowPeak_hub"
)