bigInteract example

You can read more about preparing the files necessary for a bigInteract track on UCSC’s bigInteract help page. The following code uses the example files provided by UCSC.

This code is automatically run and the built trackhub is uploaded to the trackhub-demo repository. You can view the live hub using this link.

import trackhub

hub, genomes_file, genome, trackdb = trackhub.default_hub(
    hub_name="bigInteract",
    defaultPos="chr3:63820967-63880091",
    short_label="bigInteract",
    long_label="bigInteract",
    genome="hg19",
    email="eva.jason@nih.gov",
)

track = trackhub.Track(
    name="bigInteract",
    tracktype="bigInteract",
    bigDataUrl="http://genome.ucsc.edu/goldenPath/help/examples/interact/interactExample3.inter.bb",
    shortLabel="bigInteract",
    longLabel="bigInteract",
    visibility="pack",
    spectrum="on",
    scoreMin="175",
    maxHeightPixels="300:150:20",
)
trackdb.add_tracks(track)

trackhub.upload.upload_hub(
    hub=hub, host="localhost", remote_dir="example_hubs/example_bigInteract_hub"
)