- BedTool.union_bedgraphs(*args, **kwargs)¶
Warning: using the
header=Truekwarg will result in a file that is not in true BED format, which may break downstream analysis.
Original BEDTools help::
Tool: bedtools unionbedg (aka unionBedGraphs) Version: v2.31.0 Summary: Combines multiple BedGraph files into a single file, allowing coverage comparisons between them. Usage: bedtools unionbedg [OPTIONS] -i FILE1 FILE2 .. FILEn Assumes that each BedGraph file is sorted by chrom/start and that the intervals in each are non-overlapping. Options: -header Print a header line. (chrom/start/end + names of each file). -names A list of names (one/file) to describe each file in -i. These names will be printed in the header line. -g Use genome file to calculate empty regions. - STRING. -empty Report empty regions (i.e., start/end intervals w/o values in all files). - Requires the '-g FILE' parameter. -filler TEXT Use TEXT when representing intervals having no value. - Default is '0', but you can use 'N/A' or any text. -examples Show detailed usage examples.