Tool: bedtools links (aka linksBed)
Summary: Creates HTML links to an UCSC Genome Browser from a feature file.
Usage: bedtools links [OPTIONS] -i <bed/gff/vcf> > out.html
-base The browser basename. Default: http://genome.ucsc.edu
-org The organism. Default: human
-db The build. Default: hg18
By default, the links created will point to human (hg18) UCSC browser.
If you have a local mirror, you can override this behavior by supplying
the -base, -org, and -db options.
For example, if the URL of your local mirror for mouse MM9 is called:
http://mymirror.myuniversity.edu, then you would use the following: