pybedtools.bedtool.BedTool.colormap_normalize¶
- BedTool.colormap_normalize(vmin: float | int | None = None, vmax: float | int | None = None, percentile: bool = False, log: bool = False) mcolors.LogNorm | mcolors.Normalize [source]¶
Returns a normalization instance for use by featurefuncs.add_color().
- Parameters:
- vmin, vmaxfloat, int, or None
vmin
andvmax
set the colormap bounds; if None then these will be determined from the scores in the BED file.- logbool
If True, put the scores on a log scale; of course be careful if you have negative scores
- percentilebool
If True, interpret vmin and vmax as a percentile in the range [0,100] rather than absolute values.