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Pharmacogenomics Prediction Pipeline (P3)
=========================================
Overview
--------

The P3 pipeline aims to predict drug sensitivity utilizing second-generation
sequencing data and biological annotation (gene ontology, pathways, etc.), and
*in vitro* high-throughput drug screening data.


.. image:: images/architecture_20150804.png




Contents:

.. toctree::
    :maxdepth: 2

    installation
    configuration
    features
    filtering
    topic-snakefiles
    topic-pivot
    metadoc



Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`